7DOW
The structure of the Arabidopsis thaliana guanosine deaminase in reaction with 7-deazaguansoine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-08-18 |
Detector | OXFORD ONYX CCD |
Wavelength(s) | 1.54 |
Spacegroup name | P 61 |
Unit cell lengths | 119.075, 119.075, 39.692 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 23.660 - 2.000 |
R-factor | 0.1703 |
Rwork | 0.169 |
R-free | 0.20730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7dbf |
RMSD bond length | 0.003 |
RMSD bond angle | 0.579 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHENIX |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 23.660 | 2.110 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.073 | 0.410 |
Number of reflections | 21954 | 3095 |
<I/σ(I)> | 22.5 | 4.4 |
Completeness [%] | 98.6 | 94.8 |
Redundancy | 7.9 | 4.9 |
CC(1/2) | 0.998 | 0.841 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 1.2 M Na-citrate and 0.1 M HEPES (pH 7.5) |