7DB7
Crystal structure of Mycobacterium tuberculosis phenylalanyl-tRNA synthetase in complex with compound GDI05-001
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-01-07 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97849 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 268.380, 298.801, 65.712 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.160 - 2.710 |
R-factor | 0.1942 |
Rwork | 0.193 |
R-free | 0.21890 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7daw |
RMSD bond length | 0.009 |
RMSD bond angle | 1.097 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHENIX (1.18.2_3874) |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.750 |
High resolution limit [Å] | 2.710 | 2.710 |
Rmerge | 0.133 | 0.766 |
Number of reflections | 72740 | 3594 |
<I/σ(I)> | 10.42 | 3.26 |
Completeness [%] | 99.9 | 100 |
Redundancy | 6.9 | 6.2 |
CC(1/2) | 0.985 | 0.851 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291 | 1.1M (NH4)2SO4, 0.2% PEG 3350, 0.1M HEPES pH 7.5 |