7DAA
Crystal structure of basigin complexed with anti-basigin Fab fragment
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL32XU |
Synchrotron site | SPring-8 |
Beamline | BL32XU |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-19 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 1.0 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 117.345, 247.352, 52.251 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 123.676 - 2.510 |
R-factor | 0.2305 |
Rwork | 0.228 |
R-free | 0.28330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7d9z |
RMSD bond length | 0.003 |
RMSD bond angle | 0.565 |
Data reduction software | pointless (1.12.2) |
Data scaling software | autoPROC |
Phasing software | MOLREP (11.7.03) |
Refinement software | PHENIX (1.19rc2_4022) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 123.676 | 2.706 |
High resolution limit [Å] | 2.509 | 2.509 |
Number of reflections | 18245 | 571 |
<I/σ(I)> | 7.3 | |
Completeness [%] | 86.3 | |
Redundancy | 5.1 | |
CC(1/2) | 0.993 | 0.476 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293.15 | 0.1M Tris-HCl (pH 8.0) buffer containing 0.1M sodium chloride, 0.1M cadmium chloride hemi(pentahydrate), 33% PEG 400 |