Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7D6Q

Crystal structure of the Stx2a

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPHOTON FACTORY BEAMLINE BL-1A
Synchrotron sitePhoton Factory
BeamlineBL-1A
Temperature [K]95
Detector technologyPIXEL
Collection date2018-02-04
DetectorDECTRIS EIGER X 4M
Wavelength(s)1.1
Spacegroup nameP 61
Unit cell lengths146.695, 146.695, 60.875
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution48.020 - 1.800
R-factor0.1641
Rwork0.163
R-free0.19030
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1r4p
RMSD bond length0.006
RMSD bond angle0.771
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]48.0201.900
High resolution limit [Å]1.8001.800
Rmerge0.1040.499
Number of reflections6938710290
<I/σ(I)>25.096.62
Completeness [%]100.0
Redundancy21.2
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP2934 M sodium formate, 100 mM MES pH 6.5, 50 mM 3-(1-Pyridinio)-1-propanesulfonate (PPS)

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon