7D6Q
Crystal structure of the Stx2a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE BL-1A |
Synchrotron site | Photon Factory |
Beamline | BL-1A |
Temperature [K] | 95 |
Detector technology | PIXEL |
Collection date | 2018-02-04 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 1.1 |
Spacegroup name | P 61 |
Unit cell lengths | 146.695, 146.695, 60.875 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 48.020 - 1.800 |
R-factor | 0.1641 |
Rwork | 0.163 |
R-free | 0.19030 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1r4p |
RMSD bond length | 0.006 |
RMSD bond angle | 0.771 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.020 | 1.900 |
High resolution limit [Å] | 1.800 | 1.800 |
Rmerge | 0.104 | 0.499 |
Number of reflections | 69387 | 10290 |
<I/σ(I)> | 25.09 | 6.62 |
Completeness [%] | 100.0 | |
Redundancy | 21.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 4 M sodium formate, 100 mM MES pH 6.5, 50 mM 3-(1-Pyridinio)-1-propanesulfonate (PPS) |