7D5Q
Structure of NorC transporter (K398A mutant) in an outward-open conformation in complex with a single-chain Indian camelid antibody
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-25 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97918 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 70.071, 139.148, 115.555 |
Unit cell angles | 90.00, 105.66, 90.00 |
Refinement procedure
Resolution | 111.520 - 3.600 |
R-factor | 0.30802 |
Rwork | 0.308 |
R-free | 0.31463 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7d5p |
RMSD bond length | 0.002 |
RMSD bond angle | 1.235 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0253) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 139.150 | 3.840 |
High resolution limit [Å] | 3.600 | 3.600 |
Rmerge | 0.177 | 2.760 |
Rpim | 0.043 | 0.880 |
Number of reflections | 24925 | 4460 |
<I/σ(I)> | 8.5 | 1.1 |
Completeness [%] | 99.9 | 99.3 |
Redundancy | 17.1 | 10.1 |
CC(1/2) | 0.997 | 0.486 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6 | 293 | 0.1 M HEPES pH 6.0, 50 mM NaCl, 57.1 mM CaCl2, 35.7% PEG600, 10 mM YCl3, 6.66 mM CHAPSO |