7CPO
Crystal Structure of Anolis carolinensis MHC I complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL18U1 |
Synchrotron site | SSRF |
Beamline | BL18U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-10-27 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.978 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 40.919, 93.690, 246.353 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.920 - 2.500 |
R-factor | 0.1884 |
Rwork | 0.185 |
R-free | 0.24740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5gjx |
RMSD bond length | 0.009 |
RMSD bond angle | 1.115 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.920 | 2.390 |
High resolution limit [Å] | 1.400 | 2.090 |
Rmerge | 0.143 | 0.381 |
Rmeas | 0.150 | 0.396 |
Rpim | 0.044 | 0.107 |
Number of reflections | 72758 | 9478 |
<I/σ(I)> | 7.7 | 6.5 |
Completeness [%] | 77.0 | 100 |
Redundancy | 10.5 | |
CC(1/2) | 0.981 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 277 | 0.2 M Potassium chloride, 0.1M Magnesium acetate tetrahydrate, 0.05M Sodium cacodylate trihydrate (pH 6.5), 10% w/v PEG 8000 |