7CGD
Silver-bound E.coli malate dehydrogenase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97914 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 57.641, 124.681, 85.148 |
Unit cell angles | 90.00, 106.99, 90.00 |
Refinement procedure
Resolution | 68.178 - 2.060 |
R-factor | 0.2145 |
Rwork | 0.213 |
R-free | 0.24710 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1ib6 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.490 |
Data reduction software | XDS (2017-11) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.12_2829: 000)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 81.430 | 2.120 |
High resolution limit [Å] | 2.060 | 2.060 |
Rmerge | 0.113 | 0.104 |
Rmeas | 0.123 | 0.905 |
Rpim | 0.049 | 0.379 |
Number of reflections | 72364 | 2142 |
<I/σ(I)> | 14.3 | |
Completeness [%] | 85.9 | 91.6 |
Redundancy | 6.3 | 5 |
CC(1/2) | 0.996 | 0.761 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | Tris-HCl 0.1M pH 8.5, MgCl2 0.1M, PEG3350 22% |