7CGC
Silver-bound E. coli Malate dehydrogenase (C113 and C251)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-21 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97914 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 58.222, 125.129, 85.195 |
Unit cell angles | 90.00, 107.10, 90.00 |
Refinement procedure
Resolution | 40.714 - 2.548 |
R-factor | 0.245 |
Rwork | 0.243 |
R-free | 0.29000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5z3w |
RMSD bond length | 0.003 |
RMSD bond angle | 0.497 |
Data reduction software | xia2 (0.3.7) |
Data scaling software | Aimless (0.6) |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 81.430 | 81.430 | 2.610 |
High resolution limit [Å] | 2.548 | 11.400 | 2.550 |
Rmerge | 0.193 | 0.096 | 0.519 |
Rmeas | 0.214 | 0.106 | 0.573 |
Rpim | 0.091 | 0.043 | 0.240 |
Number of reflections | 37363 | 447 | 2774 |
<I/σ(I)> | 11.9 | ||
Completeness [%] | 98.0 | 99.2 | 99.5 |
Redundancy | 5.9 | 5.5 | 6.3 |
CC(1/2) | 0.970 | 0.985 | 0.825 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.2 | 298 | Tris-HNO3 0.1M pH 7.2, PEG3000 30% |