7CDB
Structure of GABARAPL1 in complex with GABA(A) receptor gamma 2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-12-13 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97872 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 89.379, 89.379, 115.004 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 36.681 - 1.949 |
R-factor | 0.1991 |
Rwork | 0.197 |
R-free | 0.23150 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2r2q |
RMSD bond length | 0.008 |
RMSD bond angle | 0.967 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.10.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.980 |
High resolution limit [Å] | 1.949 | 5.290 | 1.950 |
Rmerge | 0.220 | 0.076 | 0.961 |
Rmeas | 0.228 | 0.079 | 0.999 |
Rpim | 0.059 | 0.020 | 0.265 |
Number of reflections | 19730 | 1069 | 967 |
<I/σ(I)> | 4.3 | ||
Completeness [%] | 96.4 | 90.7 | 98.3 |
Redundancy | 14.3 | 13.8 | 13.9 |
CC(1/2) | 0.998 | 0.775 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 5.6 | 289 | 0.2 M Ammonium acetate, 0.1 M Sodium citrate tribasic dehydrate pH 5.6, and 30% PEG 4000 |