7C6I
Crystal structure of beta-glycosides-binding protein (W177X) of ABC transporter in an open-liganded state bound to sophorose
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2018-12-28 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 62.640, 92.060, 70.010 |
Unit cell angles | 90.00, 112.85, 90.00 |
Refinement procedure
Resolution | 54.900 - 1.700 |
R-factor | 0.1677 |
Rwork | 0.166 |
R-free | 0.20730 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7c63 |
RMSD bond length | 0.014 |
RMSD bond angle | 1.984 |
Data reduction software | MOSFLM (7.2.2) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 54.900 | 54.900 | 1.730 |
High resolution limit [Å] | 1.700 | 9.000 | 1.700 |
Rmerge | 0.092 | 0.094 | 0.405 |
Rmeas | 0.103 | 0.105 | 0.463 |
Rpim | 0.046 | 0.046 | 0.217 |
Total number of observations | 377894 | 2568 | 17665 |
Number of reflections | 80275 | 570 | 4085 |
<I/σ(I)> | 11.1 | 19.7 | 2.9 |
Completeness [%] | 99.8 | 99.6 | 96.5 |
Redundancy | 4.7 | 4.5 | 4.3 |
CC(1/2) | 0.993 | 0.988 | 0.883 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | MICROBATCH | 293 | 0.2 M Ammonium sulphate, 50% PEG 8000 |