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7C33

Macro domain of SARS-CoV-2 in complex with ADP-ribose

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsNSRRC BEAMLINE TPS 05A
Synchrotron siteNSRRC
BeamlineTPS 05A
Temperature [K]100
Detector technologyCCD
Collection date2020-04-18
DetectorRAYONIX MX300-HS
Wavelength(s)0.99984
Spacegroup nameP 41
Unit cell lengths85.993, 85.993, 143.567
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.740 - 3.830
R-factor0.2382
Rwork0.235
R-free0.26820
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2acf
RMSD bond length0.018
RMSD bond angle1.335
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHENIX
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.7403.970
High resolution limit [Å]3.8303.830
Rmerge0.1630.583
Rmeas0.1860.717
Rpim0.0870.410
Number of reflections9363634
<I/σ(I)>7.68
Completeness [%]97.791.7
Redundancy3.5
CC(1/2)0.901
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP28337.5% precipitant mix (stock: 2.5% MPD, 25% PEG1000, 25% PEG3350), 0.1M pH 8.5 buffer mix (1M Tris, 1M Bicine) and 0.1M carboxylic acids mix (0.2M sodium formate, 0.2M ammonium acetate, 0.2M sodium citrate, 0.2M sodium potassium, 0.2M sodium oxamate)

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PDB entries from 2024-05-15

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