7BT2
Crystal structure of the SERCA2a in the E2.ATP state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SPRING-8 BEAMLINE BL41XU |
Synchrotron site | SPring-8 |
Beamline | BL41XU |
Temperature [K] | 40 |
Detector technology | PIXEL |
Collection date | 2016-04-10 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.0 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 121.604, 270.382, 97.340 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 14.988 - 3.000 |
R-factor | 0.193939305416 |
Rwork | 0.192 |
R-free | 0.22200 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3ar4 |
RMSD bond length | 0.006 |
RMSD bond angle | 1.107 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | CNS |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.000 | 2.680 |
High resolution limit [Å] | 2.600 | 2.600 |
Rmerge | 0.097 | 0.856 |
Rmeas | 0.103 | 0.980 |
Number of reflections | 48563 | 3559 |
<I/σ(I)> | 19.6 | 1.3 |
Completeness [%] | 97.9 | 88.2 |
Redundancy | 9.4 | 3.6 |
CC(1/2) | 0.995 | 0.577 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.2 | 283 | 5% glycerol, 20-23% PEG1500, 5 mM MgSO4, 6 mM EGTA, 6% 2-methyl-2,4-pentanediol (MPD) and 100 mM MOPS pH 7.2 |