7BF3
Crystal structure of SARS-CoV-2 macrodomain in complex with adenosine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-06-22 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.00001 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 39.222, 111.439, 195.965 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.990 - 2.000 |
R-factor | 0.1775 |
Rwork | 0.175 |
R-free | 0.21740 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ywk |
RMSD bond length | 0.013 |
RMSD bond angle | 1.387 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.990 | 48.990 | 2.070 |
High resolution limit [Å] | 2.000 | 7.750 | 2.000 |
Rmerge | 0.127 | 0.032 | 0.885 |
Rmeas | 0.147 | 0.034 | 1.036 |
Rpim | 0.053 | 0.013 | 0.376 |
Number of reflections | 59412 | 1186 | 5774 |
<I/σ(I)> | 10.9 | 2 | |
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 7.5 | 6.9 | 7.5 |
CC(1/2) | 0.998 | 0.999 | 0.735 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293.15 | 33% broad-molecular-weight PEG smears, 0.1 M MgCl2, 0.1 M tris, pH 7.0 |