7BER
SFX structure of the MyD88 TIR domain higher-order assembly (solved, rebuilt and refined using an identical protocol to the MicroED structure of the MyD88 TIR domain higher-order assembly)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | FREE ELECTRON LASER |
| Source details | SLAC LCLS BEAMLINE CXI |
| Synchrotron site | SLAC LCLS |
| Beamline | CXI |
| Temperature [K] | 300 |
| Detector technology | PIXEL |
| Collection date | 2015-12-17 |
| Detector | CS-PAD CXI-1 |
| Wavelength(s) | 1.3 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 100.400, 31.500, 54.500 |
| Unit cell angles | 90.00, 107.40, 90.00 |
Refinement procedure
| Resolution | 30.930 - 2.300 |
| R-factor | 0.2414 |
| Rwork | 0.239 |
| R-free | 0.28060 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4w8g |
| RMSD bond length | 0.001 |
| RMSD bond angle | 0.370 |
| Data reduction software | Aimless |
| Data scaling software | CrystFEL |
| Phasing software | PHASER (2.8.2) |
| Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 30.940 | 2.380 |
| High resolution limit [Å] | 2.300 | 2.300 |
| Number of reflections | 7118 | 560 |
| <I/σ(I)> | 2.6 | 1.1 |
| Completeness [%] | 95.8 | 78.1 |
| Redundancy | 1 | 1 |
| CC(1/2) | 0.900 | 0.360 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | BATCH MODE | 310 | MAL TIR (0.5-3 mM) incubated with MyD88 TIR (60-100 mM) in 10 mM HEPES pH 7.5-8, 150 mM NaCl at 310K |






