7BER
SFX structure of the MyD88 TIR domain higher-order assembly (solved, rebuilt and refined using an identical protocol to the MicroED structure of the MyD88 TIR domain higher-order assembly)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | FREE ELECTRON LASER |
Source details | SLAC LCLS BEAMLINE CXI |
Synchrotron site | SLAC LCLS |
Beamline | CXI |
Temperature [K] | 300 |
Detector technology | PIXEL |
Collection date | 2015-12-17 |
Detector | CS-PAD CXI-1 |
Wavelength(s) | 1.3 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 100.400, 31.500, 54.500 |
Unit cell angles | 90.00, 107.40, 90.00 |
Refinement procedure
Resolution | 30.930 - 2.300 |
R-factor | 0.2414 |
Rwork | 0.239 |
R-free | 0.28060 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4w8g |
RMSD bond length | 0.001 |
RMSD bond angle | 0.370 |
Data reduction software | Aimless |
Data scaling software | CrystFEL |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.940 | 2.380 |
High resolution limit [Å] | 2.300 | 2.300 |
Number of reflections | 7118 | 560 |
<I/σ(I)> | 2.6 | 1.1 |
Completeness [%] | 95.8 | 78.1 |
Redundancy | 1 | 1 |
CC(1/2) | 0.900 | 0.360 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | BATCH MODE | 310 | MAL TIR (0.5-3 mM) incubated with MyD88 TIR (60-100 mM) in 10 mM HEPES pH 7.5-8, 150 mM NaCl at 310K |