7B4G
Structural basis of reactivation of oncogenic p53 mutants by a small molecule: methylene quinuclidinone (MQ). Human p53DBD-R282W mutant bound to DNA: R282W-MQ (II)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2009-03-10 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54178 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 137.439, 49.859, 34.050 |
Unit cell angles | 90.00, 93.71, 90.00 |
Refinement procedure
Resolution | 34.290 - 1.860 |
R-factor | 0.1528 |
Rwork | 0.147 |
R-free | 0.20510 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2ac0 |
RMSD bond length | 0.007 |
RMSD bond angle | 0.948 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2-3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 1.890 |
High resolution limit [Å] | 1.860 | 5.050 | 1.860 |
Rmerge | 0.088 | 0.045 | 0.482 |
Rmeas | 0.104 | 0.054 | 0.569 |
Rpim | 0.055 | 0.029 | 0.300 |
Total number of observations | 66152 | ||
Number of reflections | 18811 | 1015 | 922 |
<I/σ(I)> | 7.7 | ||
Completeness [%] | 96.2 | 99.1 | 91.9 |
Redundancy | 3.5 | 3.4 | 3.4 |
CC(1/2) | 0.998 | 0.818 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 292 | Protein/DNA ratio 1:1.5, 0.2M Sodium Acetate, 20% w/v PEG 3350 |