7AXU
Structure of WDR5:CS-VIP8 cocrystal after illumination in situ
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-08-19 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.00 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 47.387, 47.172, 133.499 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 44.700 - 1.680 |
R-factor | 0.16064 |
Rwork | 0.159 |
R-free | 0.19330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6iam |
RMSD bond length | 0.016 |
RMSD bond angle | 1.771 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.16) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.700 | 1.740 |
High resolution limit [Å] | 1.680 | 1.680 |
Rmerge | 0.028 | 0.198 |
Rmeas | 0.040 | 0.280 |
Rpim | 0.028 | 0.198 |
Number of reflections | 34930 | 6864 |
<I/σ(I)> | 15.39 | 3.5 |
Completeness [%] | 99.8 | 99.8 |
Redundancy | 2 | 2 |
CC(1/2) | 0.998 | 0.922 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 277.15 | 10% (w/v) PEG20000, 20% (v/v) PEG550 MME, 0.02 M sodium formate, 0.02 M ammonium acetate, 0.02 M trisodium citrate, 0.02 M sodium potassium L-tartrate, 0.02 M sodium oxamate |