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7AUO

Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with PA-InsP8

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]100
Detector technologyPIXEL
Collection date2019-02-28
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.979260
Spacegroup nameP 32 2 1
Unit cell lengths61.674, 61.674, 89.219
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution45.870 - 2.650
R-factor0.2359
Rwork0.234
R-free0.27150
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7aui
RMSD bond length0.005
RMSD bond angle1.348
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.8702.780
High resolution limit [Å]2.6502.650
Rmerge0.0580.650
Rpim0.0140.152
Number of reflections6055799
<I/σ(I)>25.15.3
Completeness [%]99.899.7
Redundancy1819.1
CC(1/2)1.0000.972
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP529125% PEG 6000, 0.1 M Sodium acetate pH 5.0, 0.1 M NaCl. Protein:precipitant ratio 2:1. Protein buffer: 20 mM Tris pH 8.0, 150 mM NaCl, 1 mM DTT, 10 mM PA-InsP8.

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PDB entries from 2024-05-15

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