7APR
Bacillithiol Disulfide Reductase Bdr (YpdA) from Staphylococcus aureus
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-23 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.946444 |
Spacegroup name | P 61 2 2 |
Unit cell lengths | 180.308, 180.308, 350.459 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 29.940 - 3.100 |
R-factor | 0.2464 |
Rwork | 0.244 |
R-free | 0.29080 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7a76 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.650 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.940 | 3.180 |
High resolution limit [Å] | 3.100 | 3.100 |
Rmerge | 0.125 | 0.505 |
Rmeas | 0.119 | 0.480 |
Number of reflections | 61638 | 4471 |
<I/σ(I)> | 14.3 | 4.5 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 9.8 | 10.3 |
CC(1/2) | 0.998 | 0.938 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 298 | 0.03 M magnesium chloride, 0.03 M calcium chloride, 0.1 M bicine/Trizma, pH = 8.5, 10% w/v PEG 4000, 20% v/v glycerol |