7AOM
Structure of NUDT15 in complex with Ganciclovir triphosphate
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-16 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.243, 49.532, 135.032 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.500 - 1.950 |
R-factor | 0.2047 |
Rwork | 0.204 |
R-free | 0.22340 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lpg |
RMSD bond length | 0.016 |
RMSD bond angle | 1.088 |
Data reduction software | DIALS (3.0.0) |
Data scaling software | DIALS (3.0.0) |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 46.500 | 2.022 |
High resolution limit [Å] | 1.950 | 1.950 |
Rmerge | 0.173 | 0.725 |
Rmeas | 0.181 | 0.755 |
Number of reflections | 23223 | 2217 |
<I/σ(I)> | 7.66 | 0.75 |
Completeness [%] | 99.5 | 96.89 |
Redundancy | 12.8 | 13.6 |
CC(1/2) | 0.972 | 0.873 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 0.1M Tris pH 8.5, 0.2M sodium acetate, 34% PEG 4000 |