7AJN
Crystal Structure of the first bromodomain of BRD4 in complex with a BzD ligand
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-02 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 37.265, 44.706, 78.742 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.910 - 1.480 |
R-factor | 0.1672 |
Rwork | 0.166 |
R-free | 0.19040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2oss |
RMSD bond length | 0.017 |
RMSD bond angle | 2.183 |
Data reduction software | XDS |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 78.742 | 78.742 | 1.560 |
High resolution limit [Å] | 1.480 | 4.680 | 1.480 |
Rmerge | 0.052 | 1.522 | |
Rmeas | 0.139 | 0.054 | 1.583 |
Rpim | 0.039 | 0.016 | 0.433 |
Total number of observations | 264446 | 9416 | 43005 |
Number of reflections | 20753 | 819 | 3255 |
<I/σ(I)> | 12.1 | 35.8 | 2 |
Completeness [%] | 91.5 | 99.9 | 100 |
Redundancy | 12.7 | 11.5 | 13.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 30% PEG1000 0.1M MIB pH 7.0 |