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7A2X

Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant in complex with VSL12 at pH 5.0

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]100
Detector technologyPIXEL
Collection date2017-09-30
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9792
Spacegroup nameP 21 21 21
Unit cell lengths32.897, 33.100, 62.624
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution17.660 - 0.920
R-factor0.1307
Rwork0.130
R-free0.14830
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3ua6
Data reduction softwareXDS
Data scaling softwareAimless (0.5.31)
Phasing softwarePHASER
Refinement softwarePHENIX (1.18.2-3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]17.66017.6600.970
High resolution limit [Å]0.9202.9200.920
Rmerge0.0670.0660.527
Rmeas0.0690.0680.553
Rpim0.0140.0150.160
Total number of observations10489993721659469
Number of reflections4688216776128
<I/σ(I)>33108.95.4
Completeness [%]98.299.789.9
Redundancy22.422.29.7
CC(1/2)1.0000.9990.908
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP52980.5 M ammonium sulfate, 0.1 sodium acetate

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PDB entries from 2024-05-15

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