7A1C
LdtMT2 with covalent adduct derived from N-Thio-beta-lactam 1a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-28 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 50.212, 75.383, 68.347 |
Unit cell angles | 90.00, 111.55, 90.00 |
Refinement procedure
Resolution | 39.700 - 1.770 |
R-factor | 0.1801 |
Rwork | 0.179 |
R-free | 0.20840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5lbg |
RMSD bond length | 0.011 |
RMSD bond angle | 1.475 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0103) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.700 | 1.800 |
High resolution limit [Å] | 1.770 | 1.770 |
Rmerge | 0.061 | 0.434 |
Rpim | 0.055 | 0.322 |
Number of reflections | 44182 | 1426 |
<I/σ(I)> | 11.7 | 2.4 |
Completeness [%] | 95.5 | 54 |
Redundancy | 2.8 | 2.7 |
CC(1/2) | 0.997 | 0.840 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 4.25 | 293 | Well solution: 0.1 M Na-Citrate pH 4.25 / 17.5% PEG 6K JM12 was added to the soaking solution at 4 mM concentration. In the soaking drop, Citrate is replaced by Acetate (0.3 M) 150 mM NaCl 0.1 M Bis-Tris pH 6.2 0.3 M Na-Acetate pH 5.2 25% PEG 6K PEG 6K INCREASED to 25% FOR CRYO-PROTECTION |