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7A1C

LdtMT2 with covalent adduct derived from N-Thio-beta-lactam 1a

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsMAX IV BEAMLINE BioMAX
Synchrotron siteMAX IV
BeamlineBioMAX
Temperature [K]100
Detector technologyPIXEL
Collection date2019-06-28
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9184
Spacegroup nameP 1 21 1
Unit cell lengths50.212, 75.383, 68.347
Unit cell angles90.00, 111.55, 90.00
Refinement procedure
Resolution39.700 - 1.770
R-factor0.1801
Rwork0.179
R-free0.20840
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5lbg
RMSD bond length0.011
RMSD bond angle1.475
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwareMOLREP
Refinement softwareREFMAC (5.8.0103)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]39.7001.800
High resolution limit [Å]1.7701.770
Rmerge0.0610.434
Rpim0.0550.322
Number of reflections441821426
<I/σ(I)>11.72.4
Completeness [%]95.554
Redundancy2.82.7
CC(1/2)0.9970.840
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.25293Well solution: 0.1 M Na-Citrate pH 4.25 / 17.5% PEG 6K JM12 was added to the soaking solution at 4 mM concentration. In the soaking drop, Citrate is replaced by Acetate (0.3 M) 150 mM NaCl 0.1 M Bis-Tris pH 6.2 0.3 M Na-Acetate pH 5.2 25% PEG 6K PEG 6K INCREASED to 25% FOR CRYO-PROTECTION

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PDB entries from 2024-05-15

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