Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6ZYO

Structure of VIM-2 with 2-Mercaptomethyl-thiazolidine D-syn-1b

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I04-1
Synchrotron siteDiamond
BeamlineI04-1
Temperature [K]100
Detector technologyPIXEL
Collection date2017-12-05
DetectorDECTRIS PILATUS 6M-F
Wavelength(s)0.91587
Spacegroup nameC 1 2 1
Unit cell lengths103.530, 79.740, 68.040
Unit cell angles90.00, 130.50, 90.00
Refinement procedure
Resolution51.757 - 1.450
R-factor0.1262
Rwork0.124
R-free0.16330
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4bz3
RMSD bond length0.009
RMSD bond angle0.986
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.12_2829)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]51.7601.480
High resolution limit [Å]1.4501.450
Rpim0.0270.497
Number of reflections733963591
<I/σ(I)>16.81.6
Completeness [%]98.7
Redundancy6.8
CC(1/2)0.9990.675
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2920.2 M MAGNESIUM FORMATE, 20 % W/V PEG3350

223166

PDB entries from 2024-07-31

PDB statisticsPDBj update infoContact PDBjnumon