Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6ZYB

Sarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modification

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSLS BEAMLINE X06SA
Synchrotron siteSLS
BeamlineX06SA
Temperature [K]100
Detector technologyPIXEL
Collection date2020-06-24
DetectorDECTRIS PILATUS 2M
Wavelength(s)1.00
Spacegroup nameP 43
Unit cell lengths29.500, 29.500, 77.130
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.500 - 0.900
R-factor0.1319
Rwork0.131
R-free0.14940
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3dvz
RMSD bond length0.007
RMSD bond angle1.552
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMOLREP
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]35.0000.920
High resolution limit [Å]0.9000.900
Number of reflections963813626
<I/σ(I)>45
Completeness [%]100.0
Redundancy39.1
CC(1/2)1.0000.555
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP72933.2 M ammonium sulfate, 50 mM potassium MOPS, pH 7.0, 10 mM magnesium chloride, 10 mM manganese chloride, VAPOR DIFFUSION, SITTING DROP, temperature 293K

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon