6ZY0
Catabolic reductive dehalogenase NpRdhA, N-terminally tagged, K488Q variant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-11 |
Detector | DECTRIS PILATUS3 R CdTe 300K |
Wavelength(s) | 0.92 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 176.346, 169.569, 107.799 |
Unit cell angles | 90.00, 98.33, 90.00 |
Refinement procedure
Resolution | 106.660 - 2.130 |
R-factor | 0.1874 |
Rwork | 0.185 |
R-free | 0.22230 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6zxu |
RMSD bond length | 0.005 |
RMSD bond angle | 1.321 |
Data reduction software | xia2 |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 106.660 | 2.440 |
High resolution limit [Å] | 2.130 | 2.130 |
Rmeas | 0.196 | 1.238 |
Number of reflections | 84101 | 4206 |
<I/σ(I)> | 8.2 | 1.8 |
Completeness [%] | 94.5 | 74.6 |
Redundancy | 7 | |
CC(1/2) | 1.000 | 0.600 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 277 | 0.1 M Bis-Tris propane (pH 8.5), 0.2 M sodium nitrate and 20% w/v PEG3350 |