6ZUX
Crystal Structure of Thrombin in complex with compound42a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2011-09-16 |
Detector | MAR scanner 345 mm plate |
Wavelength(s) | 1.541870 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 70.260, 71.300, 72.450 |
Unit cell angles | 90.00, 100.43, 90.00 |
Refinement procedure
Resolution | 71.250 - 1.940 |
R-factor | 0.1644 |
Rwork | 0.162 |
R-free | 0.20600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Inhouse |
RMSD bond length | 0.020 |
RMSD bond angle | 2.011 |
Data reduction software | MOSFLM |
Data scaling software | SCALA (3.3.16) |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 71.253 | 38.443 | 2.030 |
High resolution limit [Å] | 1.939 | 6.090 | 1.939 |
Rmerge | 0.023 | 0.199 | |
Rmeas | 0.067 | 0.029 | 0.246 |
Rpim | 0.038 | 0.017 | 0.142 |
Total number of observations | 68635 | ||
Number of reflections | 25381 | 765 | 3289 |
<I/σ(I)> | 13 | 7.3 | 3.9 |
Completeness [%] | 95.4 | 87.4 | 85.4 |
Redundancy | 2.7 | 3 | 2.5 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 283 | 0.02 M phosphate buffer pH 7.5, 27% PEG 8000, 100 mM NaCl |