6ZEY
Keap1 kelch domain bound to a small molecule inhibitor of the Keap1-Nrf2 protein-protein interaction
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-26 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9772 |
Spacegroup name | P 61 |
Unit cell lengths | 104.030, 104.030, 55.992 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 52.010 - 1.801 |
R-factor | 0.1676 |
Rwork | 0.167 |
R-free | 0.18760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5fnu |
RMSD bond length | 0.005 |
RMSD bond angle | 0.837 |
Data reduction software | XDS (v Jan 26, 2018) |
Data scaling software | autoPROC (1.1.7) |
Phasing software | PHASER (1.13-2998) |
Refinement software | PHENIX (1.13-2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 52.010 | 1.865 |
High resolution limit [Å] | 1.801 | 1.801 |
Rmerge | 0.061 | 0.681 |
Rmeas | 0.064 | 0.713 |
Rpim | 0.019 | 0.208 |
Number of reflections | 32103 | 3185 |
<I/σ(I)> | 21.85 | 2.69 |
Completeness [%] | 100.0 | 99.97 |
Redundancy | 11.4 | 11.6 |
CC(1/2) | 1.000 | 0.896 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 293 | 0.5 M Ammonium sulfate, 0.1 M Sodium citrate tribasic dihydrate pH 5.6 and 1.0 M Lithium sulfate monohydrate |