6ZC5
Human Adenovirus serotype D10 FiberKnob protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-30 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.91587 |
Spacegroup name | P 31 |
Unit cell lengths | 101.357, 101.357, 326.717 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 108.910 - 2.500 |
R-factor | 0.2206 |
Rwork | 0.219 |
R-free | 0.25120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6stt |
RMSD bond length | 0.013 |
RMSD bond angle | 1.576 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 108.910 | 108.910 | 2.540 |
High resolution limit [Å] | 2.500 | 13.690 | 2.500 |
Rmerge | 0.147 | 0.069 | 2.766 |
Rmeas | 0.162 | 0.076 | 3.030 |
Rpim | 0.067 | 0.033 | 1.231 |
Total number of observations | 741038 | 4315 | 38530 |
Number of reflections | 128287 | 797 | 6440 |
<I/σ(I)> | 6.7 | 22.4 | 0.8 |
Completeness [%] | 98.7 | 99.1 | 99.3 |
Redundancy | 5.8 | 5.4 | 6 |
CC(1/2) | 0.996 | 0.993 | 0.732 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 293 | 0.2 M CaCl2, 0.1 MES, 20% w/v PEG 6000 |