6Z9C
Structure of human POLDIP2, a multifaceted adaptor protein in metabolism and genome stability
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SEALED TUBE |
Source details | BRUKER IMUS MICROFOCUS |
Temperature [K] | 110 |
Detector technology | PIXEL |
Collection date | 2019-02-22 |
Detector | Bruker PHOTON II |
Wavelength(s) | 1.54 |
Spacegroup name | P 62 |
Unit cell lengths | 120.138, 120.138, 49.516 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 23.880 - 2.800 |
R-factor | 0.2199 |
Rwork | 0.216 |
R-free | 0.28810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1VBV 5hdw |
RMSD bond length | 0.008 |
RMSD bond angle | 1.608 |
Data reduction software | PROTEUM2 |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 104.042 | 23.869 | 2.830 |
High resolution limit [Å] | 2.687 | 8.500 | 2.690 |
Rmerge | 0.033 | 2.049 | |
Rmeas | 0.159 | 0.035 | 2.397 |
Rpim | 0.058 | 0.012 | 1.216 |
Total number of observations | 2998 | 6052 | |
Number of reflections | 11561 | 372 | 1656 |
<I/σ(I)> | 13.2 | 57.1 | 0.7 |
Completeness [%] | 99.6 | 94.3 | 98.7 |
Redundancy | 7.1 | 8.1 | 3.7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2M Calcium acetate hydrate 0.1M Sodium cacodylate pH 6.5 40% (v/v) PEG 300 |