6Z8G
Crystal structure of VSG13 soaked in 0.5 M used to phase VSG13 to solve the structure.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-04-29 |
Detector | DECTRIS EIGER2 XE 16M |
Wavelength(s) | 0.9198 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 74.148, 68.407, 157.759 |
Unit cell angles | 90.00, 92.17, 90.00 |
Refinement procedure
Resolution | 52.550 - 1.560 |
R-factor | 0.226 |
Rwork | 0.226 |
R-free | 0.23300 |
Structure solution method | SAD |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | SHELXDE |
Refinement software | PHENIX (1.15.2_3472) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 52.550 | 1.620 |
High resolution limit [Å] | 1.560 | 1.560 |
Number of reflections | 109295 | 109295 |
<I/σ(I)> | 18.77 | |
Completeness [%] | 97.2 | |
Redundancy | 4 | |
CC(1/2) | 0.983 | 0.983 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 296.15 | Purified methylated VSG13 N-terminal domain was concentrated to 2.5 mg/ml in 10mM Tris.Cl pH 8.0. Crystals were grown at 23C by vapour diffusion using hanging drops formed from mixing a 1:1 volume ratio of the protein with an equilibration buffer consisting of 1.8-2.0M (NH4)2SO4, 100mM Tris.Cl pH 8.5. |