6YZ0
Full length Open-form Sodium Channel NavMs F208L in complex with Cannabidiol (CBD)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | EMBL/DESY, HAMBURG BEAMLINE X13 |
Synchrotron site | EMBL/DESY, HAMBURG |
Beamline | X13 |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2019-09-19 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9797 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 110.328, 110.328, 207.876 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 103.940 - 2.300 |
R-factor | 0.2479 |
Rwork | 0.247 |
R-free | 0.26110 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5hvx |
RMSD bond length | 0.008 |
RMSD bond angle | 0.860 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.3 (19-MAR-2020)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 103.940 | 2.380 |
High resolution limit [Å] | 2.300 | 2.300 |
Number of reflections | 29849 | 2770 |
<I/σ(I)> | 17.3 | 1 |
Completeness [%] | 100.0 | |
Redundancy | 21 | |
CC(1/2) | 0.999 | 0.877 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 277 | 0.1M lithium sulphate, 0.1M HEPES, pH 7, and 40% v/v PEG200. |