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6YYZ

tRNA-Guanine Transglycosylase (TGT) labeled with 5-fluorotryptophan in co-crystallized complex with 6-amino-2-(methylamino)-4-(2-((2R,3R,4R,5R)-3,4,5-trimethoxytetrahydrofuran-2-yl)ethyl)-1,7-dihydro-8H-imidazo[4,5-g]quinazolin-8-one

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2018-05-18
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9184
Spacegroup nameC 1 2 1
Unit cell lengths83.723, 65.036, 71.568
Unit cell angles90.00, 93.71, 90.00
Refinement procedure
Resolution37.120 - 1.210
R-factor0.1353
Rwork0.134
R-free0.15850
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1pud
RMSD bond length0.007
RMSD bond angle0.966
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.16_3549)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]37.1201.280
High resolution limit [Å]1.2101.210
Number of reflections11459117987
<I/σ(I)>14.21
Completeness [%]98.1
Redundancy3.4
CC(1/2)0.9990.846
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.5288100 mM MES pH 5.5, 0.5 mM DTT, 10% (v/v) DMSO, 13% (m/v) PEG8000

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PDB entries from 2024-08-07

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