Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6YYV

Aspartyl/Asparaginyl beta-hydroxylase (AspH) oxygenase and TPR domains in complex with manganese and 3-methyl-2-oxoglutarate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2019-12-01
DetectorDECTRIS EIGER2 XE 16M
Wavelength(s)0.97623
Spacegroup nameP 21 21 21
Unit cell lengths48.802, 70.521, 174.488
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution43.620 - 1.770
R-factor0.1745
Rwork0.173
R-free0.20840
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5jza
RMSD bond length0.012
RMSD bond angle1.149
Data reduction softwareXDS
Data scaling softwareSTARANISO
Phasing softwarePHASER
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]87.2401.960
High resolution limit [Å]1.7701.770
Rmerge0.1101.876
Number of reflections433992170
<I/σ(I)>16.11.5
Completeness [%]94.2
Redundancy13.3
CC(1/2)0.9990.540
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.9277200 mM magnesium acetate tetrahydrate, 20% w/v PEG 3350, 1 mM manganese chloride, 2 mM 3-methyl-2-oxoglutarate, 18 mg/ml protein

226707

PDB entries from 2024-10-30

PDB statisticsPDBj update infoContact PDBjnumon