6YWF
Crystal structure of Paradendryphiella salina PL7A alginate lyase
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-05-14 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.976 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 34.768, 80.442, 81.375 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.220 - 1.900 |
R-factor | 0.1545 |
Rwork | 0.151 |
R-free | 0.18780 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2cws |
RMSD bond length | 0.003 |
RMSD bond angle | 0.705 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER (2.7.16) |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.220 | 1.968 |
High resolution limit [Å] | 1.900 | 1.900 |
Rmerge | 0.080 | 0.338 |
Rmeas | 0.085 | 0.368 |
Rpim | 0.029 | 0.142 |
Number of reflections | 18624 | 11623 |
<I/σ(I)> | 17.26 | 4.94 |
Completeness [%] | 98.3 | 93.09 |
Redundancy | 8.5 | 6.5 |
CC(1/2) | 0.999 | 0.947 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4 | 298 | 20% PEG 1500, 0.1 M TBG buffer |