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6YV4

STRUCTURE OF THE WNT DEACYLASE NOTUM IN COMPLEX WITH A PYRROLE-3-CARBOXYLIC ACID FRAGMENT 686

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I24
Synchrotron siteDiamond
BeamlineI24
Temperature [K]100
Detector technologyPIXEL
Collection date2018-09-29
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9686
Spacegroup nameP 21 21 21
Unit cell lengths59.240, 73.460, 79.380
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.480 - 2.000
R-factor0.1839
Rwork0.181
R-free0.23270
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4uz1
RMSD bond length0.011
RMSD bond angle1.096
Data reduction softwarexia2
Data scaling softwareDIALS
Phasing softwarePHASER
Refinement softwarePHENIX (dev_3699)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]73.4501.750
High resolution limit [Å]1.7201.720
Rmeas0.0951.576
Number of reflections375171833
<I/σ(I)>13.41.2
Completeness [%]100.099.6
Redundancy12.312.9
CC(1/2)1.0000.900
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP42951.4 M AMMONIUM SULPHATE, 0.1 M CITRIC ACID, PH 4.0

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PDB entries from 2024-07-10

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