6YSB
Crystal structure of Malus domestica Double Bond Reductase (MdDBR) apo form
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ELETTRA BEAMLINE 5.2R |
| Synchrotron site | ELETTRA |
| Beamline | 5.2R |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2018-06-04 |
| Detector | DECTRIS PILATUS3 S 2M |
| Wavelength(s) | 1.0 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 156.609, 68.666, 68.944 |
| Unit cell angles | 90.00, 111.38, 90.00 |
Refinement procedure
| Resolution | 48.620 - 1.200 |
| R-factor | 0.1633 |
| Rwork | 0.162 |
| R-free | 0.19750 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 2j3h |
| RMSD bond length | 0.018 |
| RMSD bond angle | 2.126 |
| Data reduction software | XDS |
| Data scaling software | SCALA |
| Phasing software | MOLREP |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 48.720 | 1.220 |
| High resolution limit [Å] | 1.200 | 1.200 |
| Number of reflections | 210636 | 10469 |
| <I/σ(I)> | 12.1 | |
| Completeness [%] | 99.4 | |
| Redundancy | 3.6 | |
| CC(1/2) | 0.998 | 0.784 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION | 293.15 | 12.5% PEG 1000, 12.5% PEG 3350, 12.5% MPD, 0.03 M magnesium chloride, 0.03 M calcium chloride, 0.03 M sodium chloride, 0.03 M sodium bromide, 0.03 M sodium iodide in 0.1 M MES/imidazole pH 6.5. |






