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6YS0

Transaldolase variant D211A from T. acidophilum in complex with D-fructose 6-phosphate Schiff-base intermediate

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsPETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
Synchrotron sitePETRA III, EMBL c/o DESY
BeamlineP14 (MX2)
Temperature [K]100
Detector technologyPIXEL
Collection date2017-07-03
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.9763
Spacegroup nameC 2 2 21
Unit cell lengths148.002, 172.608, 99.309
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution65.142 - 1.700
R-factor0.1742
Rwork0.173
R-free0.19750
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3s0c
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]65.142100.0001.800
High resolution limit [Å]1.70050.0001.700
Rmerge0.0320.0291.074
Rmeas0.0330.0331.114
Total number of observations1885581
Number of reflections137733121406
<I/σ(I)>37.0957.473.21
Completeness [%]99.014.398.5
Redundancy13.69414.043
CC(1/2)1.0000.910
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP293188 mM ammonium acetate (pH 4.4), 10% (w/v) PEG 6000, and 25% (v/v) glycerol

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PDB entries from 2024-08-14

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