6YQX
Crystal structure of DeNovoTIM13, a de novo designed TIM barrel
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-11 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1 |
Spacegroup name | P 32 |
Unit cell lengths | 51.722, 51.722, 63.968 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 44.793 - 1.638 |
R-factor | 0.1738 |
Rwork | 0.171 |
R-free | 0.20140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Rosetta backbone model |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX (1.15_3459) |
Refinement software | PHENIX (1.15_3459) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 44.793 | 1.700 |
High resolution limit [Å] | 1.638 | 1.638 |
Rmerge | 0.042 | 0.552 |
Number of reflections | 23407 | 2280 |
<I/σ(I)> | 14.3 | 1.5 |
Completeness [%] | 99.5 | 97.6 |
Redundancy | 3.4 | 3.2 |
CC(1/2) | 0.998 | 0.659 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293.15 | 0.17 M sodium acetate, 0.085 M TRIS pH: 8.5, 25% w/v PEG 4000, 15% v/v Glycerol. |