6YQD
Human histidine triad nucleotide-binding protein 2 (hHINT2) refined to 1.41 A in P212121 space group
This is a non-PDB format compatible entry.
Replaces: 4NK0Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-09 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.9763 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 37.921, 74.113, 77.249 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 53.480 - 1.407 |
Rwork | 0.100 |
R-free | 0.14280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3tw2 |
RMSD bond length | 0.017 |
RMSD bond angle | 2.008 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.3) |
Phasing software | MOLREP (11.6.04) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 77.250 | 1.430 |
High resolution limit [Å] | 1.407 | 1.407 |
Rmerge | 0.073 | 0.715 |
Rmeas | 0.079 | 0.846 |
Rpim | 0.030 | 0.439 |
Number of reflections | 42522 | 1560 |
<I/σ(I)> | 18.2 | 2.1 |
Completeness [%] | 98.8 | 75.7 |
Redundancy | 12.5 | |
CC(1/2) | 0.999 | 0.755 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 281 | 8 % w/v PEG8000, 0.1 M Tris-HCl |