6YPO
Arabidopsis aspartate transcarbamoylase bound to UMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 110 |
Detector technology | PIXEL |
Collection date | 2017-07-05 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.9793 |
Spacegroup name | P 63 |
Unit cell lengths | 104.541, 104.541, 127.790 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 90.540 - 1.670 |
R-factor | 0.1518 |
Rwork | 0.149 |
R-free | 0.16790 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5g1n |
RMSD bond length | 0.005 |
RMSD bond angle | 0.642 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 90.540 | 1.730 |
High resolution limit [Å] | 1.670 | 1.670 |
Rmerge | 0.105 | 1.396 |
Number of reflections | 91035 | 9119 |
<I/σ(I)> | 12.74 | 1.64 |
Completeness [%] | 99.4 | 99.99 |
Redundancy | 10.3 | 10 |
CC(1/2) | 0.997 | 0.601 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 294 | Protein at 5 mg/ml in buffer 20 mM Tris pH 7.0, 0.1 M NaCl, 2 % glycerol and 0.2 mM tris(2-carboxyethyl) phosphine (TCEP). Crystallization reservoir: 22 % PEG 3350, 0.1 M sodium sulfate, 0.1 M bis-tris pH 6.5 |