6YOD
Structure of Lysozyme from SiN IMISX setup collected by rotation serial crystallography on crystals prelocated by 2D X-ray phase-contrast imaging
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-09-05 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 78.990, 78.990, 38.190 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 39.495 - 1.601 |
R-factor | 0.1904 |
Rwork | 0.189 |
R-free | 0.21100 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5d5f |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (dev_3494) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.495 | 1.640 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmeas | 0.210 | 12.170 |
Number of reflections | 16419 | 1147 |
<I/σ(I)> | 13.58 | 0.86 |
Completeness [%] | 99.9 | |
Redundancy | 40.98 | 36.73 |
CC(1/2) | 0.990 | 0.260 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | LIPIDIC CUBIC PHASE | 4.5 | 293 | 0.5-1 M NaBr, 50-100 mM CH3COONa, pH 4.5, and 15-30 %(v/v) PEG400 |