Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6YM3

Crystal structure of Compound 1 with PIP4K2A

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2016-03-08
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.91841
Spacegroup nameP 1 21 1
Unit cell lengths43.934, 98.132, 104.256
Unit cell angles90.00, 92.96, 90.00
Refinement procedure
Resolution45.990 - 2.050
R-factor0.2036
Rwork0.202
R-free0.25000
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2ybx
RMSD bond length0.017
RMSD bond angle2.142
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]45.9902.120
High resolution limit [Å]2.0502.050
Rmerge0.0600.512
Number of reflections595739014
<I/σ(I)>12.5
Completeness [%]99.399.3
Redundancy3.68
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP277PEG3350, magnesium formate, glycerol

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon