6YJJ
Structure of CYRI-B (FAM49B) from Rhincodon typus (selenomethionine derivative)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-10-21 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9611 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 40.400, 72.820, 107.320 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 53.660 - 2.400 |
R-factor | 0.2067 |
Rwork | 0.205 |
R-free | 0.24150 |
Structure solution method | SAD |
Data reduction software | iMOSFLM |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 72.820 | 72.820 | 2.490 |
High resolution limit [Å] | 2.400 | 8.980 | 2.400 |
Rmerge | 0.123 | 0.052 | 1.032 |
Rmeas | 0.130 | 0.055 | 1.102 |
Rpim | 0.042 | 0.018 | 0.382 |
Total number of observations | 123774 | 2485 | 10889 |
Number of reflections | 13006 | 308 | 1329 |
<I/σ(I)> | 12.8 | 36.7 | 2.1 |
Completeness [%] | 100.0 | 99.9 | 100 |
Redundancy | 9.5 | 8.1 | 8.2 |
CC(1/2) | 0.998 | 0.997 | 0.782 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 288.15 | 25% PEG3350, 0.1 M Bis-Tris pH 5.5 and 0.2 M ammonium acetate |