6YJ9
DarB in complex with 3'3'cGAMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-10-27 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 41.490, 69.920, 105.780 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.680 - 1.500 |
R-factor | 0.1551 |
Rwork | 0.153 |
R-free | 0.19070 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1yav |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 35.680 | 50.000 | 1.520 |
High resolution limit [Å] | 1.500 | 17.000 | 1.500 |
Rmerge | 0.037 | 0.022 | 0.608 |
Rmeas | 0.039 | 0.024 | 0.632 |
Total number of observations | 650885 | ||
Number of reflections | 50229 | 45 | 1915 |
<I/σ(I)> | 31.06 | 53.68 | 4.2 |
Completeness [%] | 99.9 | 84.9 | 100 |
Redundancy | 12.958 | 5.556 | 13.341 |
CC(1/2) | 1.000 | 1.000 | 0.942 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293.15 | 0.1 M Tris/HCl PH 8.5, 32 % w/v polyethylene glycol 4000, 5 % v/v/ glycerol |