6YJ7
DarB fom B. subtilis in complex with AMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-10-27 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.97625 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 41.310, 69.260, 105.420 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.940 - 1.640 |
R-factor | 0.1901 |
Rwork | 0.189 |
R-free | 0.22040 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1yav |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 41.940 | 50.000 | 1.710 |
High resolution limit [Å] | 1.640 | 17.000 | 1.640 |
Rmerge | 0.028 | 0.021 | 0.654 |
Rmeas | 0.029 | 0.024 | 0.680 |
Total number of observations | 502479 | ||
Number of reflections | 37896 | 46 | 4316 |
<I/σ(I)> | 40.44 | 77.34 | 4.12 |
Completeness [%] | 99.8 | 86.8 | 99.8 |
Redundancy | 13.259 | 5.543 | 13.526 |
CC(1/2) | 1.000 | 0.999 | 0.974 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293.15 | 0.1 M Tris/HCl PH 8.5, 32 % w/v polyethylene glycol 4000, 5 % v/v/ glycerol |