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6YHE

tRNA-Guanine Transglycosylase (TGT) labeled with 5-fluorotryptophan in co-crystallized complex with 6-amino-4-(2-((3aR,4R,6R,6aR)-6-methoxy-2,2-dimethyltetrahydrofuro[3,4-d][1,3]dioxol-4-yl)ethyl)-2-(methylamino)-1H-imidazo[4,5-g]quinazolin-8(7H)-one

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]100
Detector technologyPIXEL
Collection date2018-12-07
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.9184
Spacegroup nameC 1 2 1
Unit cell lengths84.657, 64.820, 71.808
Unit cell angles90.00, 93.96, 90.00
Refinement procedure
Resolution42.630 - 1.540
R-factor0.1508
Rwork0.149
R-free0.18340
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)1pud
RMSD bond length0.008
RMSD bond angle1.002
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.16_3549)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]42.6301.640
High resolution limit [Å]1.5401.540
Number of reflections555778659
<I/σ(I)>13.07
Completeness [%]97.6
Redundancy3.1
CC(1/2)0.9980.864
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP5.5288100 mM MES pH 5.5, 0.5 mM DTT, 10% (v/v) DMSO, 13% (m/v) PEG8000

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PDB entries from 2024-08-07

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