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6YFD

Virus-like particle of Beihai levi-like virus 14

This is a non-PDB format compatible entry.
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.1
Synchrotron siteBESSY
Beamline14.1
Temperature [K]298
Detector technologyPIXEL
Collection date2019-03-22
DetectorDECTRIS PILATUS3 S 6M
Wavelength(s)0.9184
Spacegroup nameP 21 21 2
Unit cell lengths328.670, 373.710, 310.500
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution49.332 - 3.300
R-factor0.2649
Rwork0.265
R-free0.26700
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2ms2
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareFFT
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]49.33249.3323.500
High resolution limit [Å]3.3009.7003.300
Rmerge0.6470.1762.255
Rmeas0.7150.1922.747
Total number of observations2846288
Number of reflections5362422281470084
<I/σ(I)>2.288.240.46
Completeness [%]94.49876.8
Redundancy5.3085.7422.453
CC(1/2)0.9370.9830.171
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.52935% PEG 4000, 0.1 M magnesium chloride, 0.1 M MES pH 6.5

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