6YED
E.coli's Putrescine receptor PotF in its open apo state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 76.220, 53.450, 88.130 |
Unit cell angles | 90.00, 111.59, 90.00 |
Refinement procedure
Resolution | 45.900 - 2.180 |
R-factor | 0.2303 |
Rwork | 0.228 |
R-free | 0.27300 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1a99 |
RMSD bond length | 0.002 |
RMSD bond angle | 0.496 |
Data reduction software | XDS (20180126) |
Data scaling software | XDS (20180126) |
Phasing software | PHASER (2.8.1) |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 45.900 | 2.258 |
High resolution limit [Å] | 2.180 | 2.180 |
Rmerge | 0.157 | 0.970 |
Rmeas | 0.164 | 1.023 |
Rpim | 0.049 | 0.320 |
Number of reflections | 67443 | 3433 |
<I/σ(I)> | 13.39 | 4.65 |
Completeness [%] | 100.0 | 99.91 |
Redundancy | 10.9 | 9.7 |
CC(1/2) | 0.997 | 0.871 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.2 | 293 | 0.1 M Tris pH 7.2, 0.2 M NaCl, 35% PEG 3000 |