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6YCP

Crystal structure of GcoA F169V bound to o-vanillin

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2018-10-22
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97955
Spacegroup nameP 43 21 2
Unit cell lengths104.193, 104.193, 115.334
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.480 - 1.800
R-factor0.1628
Rwork0.162
R-free0.18310
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5ncb
RMSD bond length0.010
RMSD bond angle1.136
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHASER
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.4801.864
High resolution limit [Å]1.7991.799
Rmerge0.138
Number of reflections593575809
<I/σ(I)>28.195.06
Completeness [%]99.8
Redundancy2
CC(1/2)1.0000.947
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP298Na Malonate, HEPES, o-vanillin

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PDB entries from 2024-05-15

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