6YA2
Crystal structure of TSWV glycoprotein N ectodomain (Trypsin treated)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.2 |
Synchrotron site | BESSY |
Beamline | 14.2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-09-26 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 0.9184 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 69.660, 76.010, 71.180 |
Unit cell angles | 90.00, 106.56, 90.00 |
Refinement procedure
Resolution | 18.850 - 2.500 |
R-factor | 0.2145 |
Rwork | 0.213 |
R-free | 0.24450 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ya0 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHENIX |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 18.850 | 18.850 | 2.600 |
High resolution limit [Å] | 2.500 | 15.000 | 2.500 |
Rmerge | 0.100 | 0.040 | 1.833 |
Rmeas | 0.108 | 0.044 | 1.977 |
Total number of observations | 170741 | ||
Number of reflections | 24477 | 62 | 2700 |
<I/σ(I)> | 13.14 | 40.11 | 1 |
Completeness [%] | 98.5 | 48.4 | 98.2 |
Redundancy | 6.976 | 5.161 | 7.12 |
CC(1/2) | 0.999 | 0.999 | 0.560 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 289 | 19% PEG 8,000 (w/v) 0.1 M tris pH 7.5 0.2 M magnesium chloride hexahydrate |