Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6YA2

Crystal structure of TSWV glycoprotein N ectodomain (Trypsin treated)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsBESSY BEAMLINE 14.2
Synchrotron siteBESSY
Beamline14.2
Temperature [K]100
Detector technologyPIXEL
Collection date2019-09-26
DetectorDECTRIS PILATUS 2M
Wavelength(s)0.9184
Spacegroup nameP 1 21 1
Unit cell lengths69.660, 76.010, 71.180
Unit cell angles90.00, 106.56, 90.00
Refinement procedure
Resolution18.850 - 2.500
R-factor0.2145
Rwork0.213
R-free0.24450
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6ya0
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHENIX
Refinement softwarePHENIX (1.17.1_3660)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]18.85018.8502.600
High resolution limit [Å]2.50015.0002.500
Rmerge0.1000.0401.833
Rmeas0.1080.0441.977
Total number of observations170741
Number of reflections24477622700
<I/σ(I)>13.1440.111
Completeness [%]98.548.498.2
Redundancy6.9765.1617.12
CC(1/2)0.9990.9990.560
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.528919% PEG 8,000 (w/v) 0.1 M tris pH 7.5 0.2 M magnesium chloride hexahydrate

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon